This tab provides a complete list of all metadata files submitted by the atlas.

Synapse ID	Category	Num Records	Percent Complete Metadata
syn39141309	Biospecimen	1866	19.88%
syn39142015	BreastCancerTier3	78	22.16%
syn39140594	BulkRNA-seqLevel1	162	22.95%
syn39142062	BulkRNA-seqLevel2	65	30.30%
syn39142026	BulkRNA-seqLevel3	70	56.25%
syn39140863	BulkWESLevel1	324	39.63%
syn53280193	BulkWESLevel1	187	36.24%
syn39142091	BulkWESLevel2	68	19.81%
syn53280205	BulkWESLevel2	73	18.98%
syn52844205	BulkWESLevel3	146	67.66%
syn53280207	BulkWESLevel3	64	68.32%
syn39141994	ClinicalDataTier2	78	14.70%
syn39141967	Demographics	33	46.88%
syn39141331	Diagnosis	33	12.64%
syn53182950	ElectronMicroscopyLevel1	2931	96.43%
syn53183040	ElectronMicroscopyLevel1	2546	96.43%
syn53183113	ElectronMicroscopyLevel1	4893	98.27%
syn53183134	ElectronMicroscopyLevel1	3044	96.43%
syn53183177	ElectronMicroscopyLevel1	2965	96.43%
syn53183236	ElectronMicroscopyLevel1	2857	96.43%
syn53183239	ElectronMicroscopyLevel1	3248	96.43%
syn53183288	ElectronMicroscopyLevel1	2203	96.43%
syn53183289	ElectronMicroscopyLevel1	3123	96.43%
syn53183299	ElectronMicroscopyLevel1	2060	96.43%
syn53183301	ElectronMicroscopyLevel1	287	96.43%
syn53183302	ElectronMicroscopyLevel1	2695	96.43%
syn53183318	ElectronMicroscopyLevel1	2675	96.43%
syn53183325	ElectronMicroscopyLevel1	2118	96.43%
syn53183336	ElectronMicroscopyLevel1	2003	96.43%
syn53351449	ElectronMicroscopyLevel1	4286	92.74%
syn53351476	ElectronMicroscopyLevel1	2264	92.86%
syn53351512	ElectronMicroscopyLevel1	2430	92.61%
syn53351554	ElectronMicroscopyLevel1	1418	92.86%
syn53351701	ElectronMicroscopyLevel1	2509	92.61%
syn53351708	ElectronMicroscopyLevel1	3171	92.67%
syn53351768	ElectronMicroscopyLevel1	53	92.86%
syn53351831	ElectronMicroscopyLevel1	2207	92.86%
syn53351838	ElectronMicroscopyLevel1	2119	92.63%
syn53351926	ElectronMicroscopyLevel1	2254	92.61%
syn53351967	ElectronMicroscopyLevel1	2580	92.71%
syn66310048	ElectronMicroscopyLevel1	1302	92.59%
syn66310058	ElectronMicroscopyLevel1	1069	92.59%
syn66310059	ElectronMicroscopyLevel1	2292	92.59%
syn66310064	ElectronMicroscopyLevel1	2064	92.59%
syn66310067	ElectronMicroscopyLevel1	2433	92.59%
syn66310070	ElectronMicroscopyLevel1	2553	92.59%
syn66310071	ElectronMicroscopyLevel1	2393	92.59%
syn66310072	ElectronMicroscopyLevel1	221	92.59%
syn66310585	ElectronMicroscopyLevel1	1974	92.59%
syn66310586	ElectronMicroscopyLevel1	14	92.59%
syn66310589	ElectronMicroscopyLevel1	3207	92.59%
syn66310590	ElectronMicroscopyLevel1	2651	92.59%
syn66310591	ElectronMicroscopyLevel1	300	92.59%
syn66310592	ElectronMicroscopyLevel1	1812	92.59%
syn66310593	ElectronMicroscopyLevel1	16	92.59%
syn66310594	ElectronMicroscopyLevel1	42	92.59%
syn66310595	ElectronMicroscopyLevel1	2402	92.59%
syn66310606	ElectronMicroscopyLevel1	2043	92.59%
syn68742159	ElectronMicroscopyLevel1	2436	92.59%
syn68742171	ElectronMicroscopyLevel1	2981	92.59%
syn53251539	ElectronMicroscopyLevel2	1832	88.88%
syn53251541	ElectronMicroscopyLevel2	2327	100.00%
syn53251542	ElectronMicroscopyLevel2	4482	100.00%
syn53251543	ElectronMicroscopyLevel2	2276	88.88%
syn53251544	ElectronMicroscopyLevel2	2307	100.00%
syn53251545	ElectronMicroscopyLevel2	1917	100.00%
syn53251546	ElectronMicroscopyLevel2	2277	100.00%
syn53251547	ElectronMicroscopyLevel2	2349	100.00%
syn53251558	ElectronMicroscopyLevel2	1719	100.00%
syn53251559	ElectronMicroscopyLevel2	1626	88.89%
syn53251562	ElectronMicroscopyLevel2	1393	88.89%
syn53251569	ElectronMicroscopyLevel2	1	88.89%
syn53251570	ElectronMicroscopyLevel2	1573	88.89%
syn53251577	ElectronMicroscopyLevel2	1467	88.89%
syn53251578	ElectronMicroscopyLevel2	1569	88.89%
syn66527730	ElectronMicroscopyLevel2	1505	87.50%
syn66531425	ElectronMicroscopyLevel2	1517	87.50%
syn66534362	ElectronMicroscopyLevel2	1748	87.50%
syn66534365	ElectronMicroscopyLevel2	1602	87.50%
syn66534369	ElectronMicroscopyLevel2	1587	87.50%
syn66534371	ElectronMicroscopyLevel2	1	87.50%
syn66534378	ElectronMicroscopyLevel2	1612	87.50%
syn66534379	ElectronMicroscopyLevel2	1	87.50%
syn66534380	ElectronMicroscopyLevel2	1343	87.50%
syn66534384	ElectronMicroscopyLevel2	1597	87.50%
syn66534385	ElectronMicroscopyLevel2	1662	87.50%
syn66534388	ElectronMicroscopyLevel2	1882	87.50%
syn66534389	ElectronMicroscopyLevel2	1402	87.50%
syn66534395	ElectronMicroscopyLevel2	1637	87.50%
syn66534396	ElectronMicroscopyLevel2	1	87.50%
syn66534398	ElectronMicroscopyLevel2	1327	87.50%
syn66534399	ElectronMicroscopyLevel2	1	87.50%
syn66534406	ElectronMicroscopyLevel2	2076	87.50%
syn66534409	ElectronMicroscopyLevel2	1561	87.50%
syn66534410	ElectronMicroscopyLevel2	1	87.50%
syn66534411	ElectronMicroscopyLevel2	1	87.50%
syn66534412	ElectronMicroscopyLevel2	1	87.50%
syn66534414	ElectronMicroscopyLevel2	1269	87.50%
syn66534416	ElectronMicroscopyLevel2	1323	87.50%
syn66534423	ElectronMicroscopyLevel2	1769	87.50%
syn68742279	ElectronMicroscopyLevel2	1646	87.50%
syn68743031	ElectronMicroscopyLevel2	2276	87.50%
syn68922422	ElectronMicroscopyLevel2	546	87.50%
syn68922428	ElectronMicroscopyLevel2	308	87.50%
syn68922446	ElectronMicroscopyLevel2	719	87.50%
syn68929224	ElectronMicroscopyLevel2	2	87.50%
syn68917756	ElectronMicroscopyLevel3	32	100.00%
syn68917755	ElectronMicroscopyLevel4	41	83.33%
syn39141342	Exposure	33	6.90%
syn39141349	FamilyHistory	33	14.29%
syn39141359	FollowUp	33	7.27%
syn68876329	ImagingLevel1	779	60.00%
syn35465046	ImagingLevel2	412	75.21%
syn53352007	ImagingLevel2	67	78.26%
syn68918337	ImagingLevel2	77	73.33%
syn50932231	ImagingLevel3Segmentation	448	81.44%
syn53352057	ImagingLevel3Segmentation	201	76.92%
syn53352058	ImagingLevel4	410	72.91%
syn53352069	ImagingLevel4	201	73.33%
syn39141939	MolecularTest	1461	27.98%
syn68924015	NA	308	92.71%
syn68924054	NanoStringGeoMxDSPSpatialTranscriptomicsLevel3	46	64.29%
syn53242349	RPPALevel2	53	41.30%
syn53242447	RPPALevel3	53	91.13%
syn53243031	RPPALevel4	74	89.19%
syn39142047	ScATAC-seqLevel1	38	85.40%
syn53335385	ScATAC-seqLevel1	28	81.25%
syn53335541	ScATAC-seqLevel2	14	38.71%
syn53335662	ScATAC-seqLevel2	19	38.71%
syn53335554	ScATAC-seqLevel3	14	13.64%
syn53335659	ScATAC-seqLevel3	24	13.64%
syn68918382	ScDNA-seqLevel1	1615	23.91%
syn68918623	ScDNA-seqLevel2	1271	33.33%
syn68876286	ScRNA-seqLevel1	100	97.30%
syn68876293	ScRNA-seqLevel2	13	94.44%
syn68876301	ScRNA-seqLevel3	13	100.00%
syn39141376	Therapy	125	30.00%

This tab provides a complete list of all validation errors detected by the dashboard.

NA is not yet supported by the Dashboard. Please notify Ethan to update the code!
NanoStringGeoMxDSPSpatialTranscriptomicsLevel3 is not yet supported by the Dashboard. Please notify Ethan to update the code!
ScDNA-seqLevel1 is not yet supported by the Dashboard. Please notify Ethan to update the code!
ScDNA-seqLevel2 is not yet supported by the Dashboard. Please notify Ethan to update the code!

Validation Passed.

Invalid HTAN Parent Data File ID: HTA9_1_22173' [Error occurred while processing file: syn53251539 of type ElectronMicroscopyLevel2].
Invalid HTAN Parent Data File ID: HTA9_2_2287' [Error occurred while processing file: syn53251543 of type ElectronMicroscopyLevel2].
Invalid HTAN Parent Data File ID: HTA9_26_1608' [Error occurred while processing file: syn68929224 of type ElectronMicroscopyLevel2].
Invalid HTAN Parent Data File ID: HTA9_26_1927' [Error occurred while processing file: syn68929224 of type ElectronMicroscopyLevel2].

HTA9_1_35257 references parent ID=HTA9_1_22173', but no such ID exists. [Error occurred while processing file: syn53251539 of type ElectronMicroscopyLevel2].
HTA9_2_8441 references parent ID=HTA9_2_2287', but no such ID exists. [Error occurred while processing file: syn53251543 of type ElectronMicroscopyLevel2].
HTA9_26_4426 references parent ID=HTA9_26_1608', but no such ID exists. [Error occurred while processing file: syn68929224 of type ElectronMicroscopyLevel2].
HTA9_26_4674 references parent ID=HTA9_26_1927', but no such ID exists. [Error occurred while processing file: syn68929224 of type ElectronMicroscopyLevel2].

Validation Passed.

In folder: em_level_4, file name: HTA9_1_8_3DEM movie.mpg contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 185.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 192-193.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 183-184.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 196-199.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 190.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 202-204.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 131-132.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 137-141.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 168-169.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 170-171.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 175.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 176-present.csv contains unsupported characters.
In folder: rppa_antibody_tables, file name: MDACC_RPPA_Ab_List_Set 186-current.csv contains unsupported characters.

These plots are designed to visually summarize the data completeness of an HTAN atlas.

For example:

how much Tier 1 clinical data has the atlas provided?
for sequencing or imaging data, has the atlas provided Level 1-4 data?

Clinical Data Matrix: Tiers 1 and 2

ParticipantID	Demographics	Exposure	FamilyHistory	FollowUp	Diagnosis	Therapy	MolecularTest	ClinicalDataTier2
HTA9_1	1	1	1	1	1	1	1	1
HTA9_2	1	1	1	1	1	1	1	1
HTA9_3	1	1	1	1	1	1	1	1
HTA9_7	1	1	1	1	1	1	1	1
HTA9_8	1	1	1	1	1	1	1	1
HTA9_9	1	1	1	1	1	1	1	1
HTA9_10	1	1	1	1	1	1	1	1
HTA9_11	1	1	1	1	1	1	1	1
HTA9_12	1	1	1	1	1	1	1	1
HTA9_13	1	1	1	1	1	1	1	1
HTA9_14	1	1	1	1	1	1	1	1
HTA9_15	1	1	1	1	1	1	1	1
HTA9_16	1	1	1	1	1	1	1	1
HTA9_17	1	1	1	1	1	1	1	1
HTA9_18	1	1	1	1	1	1	1	1
HTA9_23	1	1	1	1	1	1	1	1
HTA9_24	1	1	1	1	1	1	1	1
HTA9_25	1	1	1	1	1	1	1	1
HTA9_26	1	1	1	1	1	1	1	1
HTA9_27	1	1	1	1	1	1	1	1
HTA9_28	1	1	1	1	1	1	1	1
HTA9_29	1	1	1	1	1	1	1	1
HTA9_30	1	1	1	1	1	1	1	1
HTA9_32	1	1	1	1	1	1	1	1
HTA9_34	1	1	1	1	1	1	1	1
HTA9_36	1	1	1	1	1	1	1	1
HTA9_38	1	1	1	1	1	1	1	1
HTA9_40	1	1	1	1	1	1	1	1
HTA9_41	1	1	1	1	1	1	1	1
HTA9_42	1	1	1	1	1	1	1	1
HTA9_43	1	1	1	1	1	1	1	1
HTA9_44	1	1	1	1	1	1	1	1
HTA9_45	1	1	1	1	1	1	1	1

	Counts
Demographics	33
Exposure	33
FamilyHistory	33
FollowUp	33
Diagnosis	33
Therapy	33
MolecularTest	33
ClinicalDataTier2	33
SRRSClinicalDataTier2	0

Clinical Data Matrix: Tier 3

ParticipantID	AcuteLym..	Neurobla..	BreastCa..	Colorect..	LungCanc..	Melanoma..	OvarianC..	Pancreat..	Prostate..	SarcomaT..
HTA9_1	0	0	1	0	0	0	0	0	0	0
HTA9_2	0	0	1	0	0	0	0	0	0	0
HTA9_3	0	0	1	0	0	0	0	0	0	0
HTA9_7	0	0	1	0	0	0	0	0	0	0
HTA9_8	0	0	1	0	0	0	0	0	0	0
HTA9_9	0	0	1	0	0	0	0	0	0	0
HTA9_10	0	0	1	0	0	0	0	0	0	0
HTA9_11	0	0	1	0	0	0	0	0	0	0
HTA9_12	0	0	1	0	0	0	0	0	0	0
HTA9_13	0	0	1	0	0	0	0	0	0	0
HTA9_14	0	0	1	0	0	0	0	0	0	0
HTA9_15	0	0	1	0	0	0	0	0	0	0
HTA9_16	0	0	1	0	0	0	0	0	0	0
HTA9_17	0	0	1	0	0	0	0	0	0	0
HTA9_18	0	0	1	0	0	0	0	0	0	0
HTA9_23	0	0	1	0	0	0	0	0	0	0
HTA9_24	0	0	1	0	0	0	0	0	0	0
HTA9_25	0	0	1	0	0	0	0	0	0	0
HTA9_26	0	0	1	0	0	0	0	0	0	0
HTA9_27	0	0	1	0	0	0	0	0	0	0
HTA9_28	0	0	1	0	0	0	0	0	0	0
HTA9_29	0	0	1	0	0	0	0	0	0	0
HTA9_30	0	0	1	0	0	0	0	0	0	0
HTA9_32	0	0	1	0	0	0	0	0	0	0
HTA9_34	0	0	1	0	0	0	0	0	0	0
HTA9_36	0	0	1	0	0	0	0	0	0	0
HTA9_38	0	0	1	0	0	0	0	0	0	0
HTA9_40	0	0	1	0	0	0	0	0	0	0
HTA9_41	0	0	1	0	0	0	0	0	0	0
HTA9_42	0	0	1	0	0	0	0	0	0	0
HTA9_43	0	0	1	0	0	0	0	0	0	0
HTA9_44	0	0	1	0	0	0	0	0	0	0
HTA9_45	0	0	1	0	0	0	0	0	0	0

	Counts
AcuteLym..	0
Neurobla..	0
BreastCa..	33
Colorect..	0
LungCanc..	0
Melanoma..	0
OvarianC..	0
Pancreat..	0
Prostate..	0
SarcomaT..	0

Assay Matrix: Single Cell Data

BiospecimenID	ScRNA-seqLevel1	ScRNA-seqLevel2	ScRNA-seqLevel3	ScATAC-seqLevel1	ScATAC-seqLevel2	ScATAC-seqLevel3
HTA9_1_143	0	0	0	1	1	1
HTA9_1_160	1	1	1	0	0	0
HTA9_2_40	0	0	0	1	1	1
HTA9_2_59	0	0	0	1	1	1
HTA9_3_40	0	0	0	1	1	1
HTA9_3_59	0	0	0	1	1	1
HTA9_7_29	0	0	0	1	1	1
HTA9_7_38	0	0	0	1	1	1
HTA9_8_28	0	0	0	1	1	1
HTA9_9_29	0	0	0	1	1	1
HTA9_9_38	0	0	0	1	1	1
HTA9_10_29	0	0	0	1	1	1
HTA9_11_28	0	0	0	1	1	1
HTA9_12_3	0	0	0	1	1	1
HTA9_13_28	0	0	0	1	1	1
HTA9_14_29	0	0	0	1	1	1
HTA9_14_38	0	0	0	1	1	1
HTA9_15_30	0	0	0	1	1	1
HTA9_15_84	0	0	0	1	1	1
HTA9_16_29	0	0	0	1	1	1
HTA9_16_38	0	0	0	1	1	1
HTA9_16_43	1	1	1	0	0	0
HTA9_16_44	1	1	1	0	0	0
HTA9_17_29	0	0	0	1	1	1
HTA9_17_43	1	1	1	0	0	0
HTA9_17_44	1	1	1	0	0	0
HTA9_18_29	0	0	0	1	1	1
HTA9_18_38	0	0	0	1	1	1
HTA9_18_42	1	1	1	0	0	0
HTA9_18_43	1	1	1	0	0	0
HTA9_24_29	0	0	0	1	1	1
HTA9_24_37	0	0	0	1	1	1
HTA9_24_74	1	1	1	0	0	0
HTA9_28_27	0	0	0	1	1	1
HTA9_29_57	1	1	1	0	0	0
HTA9_29_58	1	1	1	0	0	0
HTA9_42_24	1	1	1	0	0	0
HTA9_42_25	1	1	1	0	0	0
HTA9_44_26	1	1	1	0	0	0

	Counts
ScRNA-seqLevel1	13
ScRNA-seqLevel2	13
ScRNA-seqLevel3	13
ScRNA-seqLevel4	0
ScATAC-seqLevel1	26
ScATAC-seqLevel2	26
ScATAC-seqLevel3	26
ScATAC-seqLevel4	0

Assay Matrix: Bulk Data

BiospecimenID	BulkRNA-seqLevel1	BulkRNA-seqLevel2	BulkRNA-seqLevel3	BulkWESLevel1	BulkWESLevel2	BulkWESLevel3
HTA9_1_1	1	0	1	1	1	1
HTA9_1_7	0	0	0	1	1	0
HTA9_1_9	1	0	1	1	1	1
HTA9_1_21	0	0	0	1	1	0
HTA9_1_33	1	0	1	1	1	1
HTA9_1_52	0	0	0	1	1	0
HTA9_1_53	0	0	0	1	1	1
HTA9_1_54	0	0	0	1	1	1
HTA9_1_55	0	0	0	1	1	1
HTA9_1_56	0	0	0	1	1	1
HTA9_1_57	0	0	0	1	1	1
HTA9_1_58	0	0	0	1	1	1
HTA9_1_59	0	0	0	1	0	0
HTA9_1_60	0	0	0	1	0	0
HTA9_1_61	0	0	0	1	0	0
HTA9_1_62	0	0	0	1	0	0
HTA9_1_63	0	0	0	1	0	0
HTA9_1_64	0	0	0	1	0	0
HTA9_1_65	0	0	0	1	0	0
HTA9_1_66	0	0	0	1	0	0
HTA9_1_67	0	0	0	1	0	0
HTA9_1_68	0	0	0	1	0	0
HTA9_1_69	0	0	0	1	0	0
HTA9_1_70	0	0	0	1	0	0
HTA9_1_71	0	0	0	1	0	0
HTA9_1_72	0	0	0	1	0	0
HTA9_1_73	0	0	0	1	0	0
HTA9_1_74	0	0	0	1	0	0
HTA9_1_75	0	0	0	1	0	0
HTA9_1_76	0	0	0	1	0	0
HTA9_1_77	0	0	0	1	0	0
HTA9_1_78	0	0	0	1	0	0
HTA9_1_79	0	0	0	1	0	0
HTA9_1_80	0	0	0	1	0	0
HTA9_1_81	0	0	0	1	0	0
HTA9_1_82	0	0	0	1	0	0
HTA9_1_83	0	0	0	1	0	0
HTA9_1_84	0	0	0	1	0	0
HTA9_1_85	0	0	0	1	0	0
HTA9_1_86	1	1	1	1	1	1
HTA9_1_97	1	1	1	1	1	1
HTA9_1_109	0	0	0	1	1	1
HTA9_1_144	1	1	1	1	1	1
HTA9_1_162	0	0	0	1	1	1
HTA9_1_163	0	0	0	1	1	1
HTA9_2_1	1	1	1	1	1	1
HTA9_2_74	1	1	1	1	1	1
HTA9_2_88	0	0	0	1	1	1
HTA9_3_5	1	1	1	1	1	1
HTA9_3_70	1	1	1	1	1	1
HTA9_3_73	1	1	1	1	1	1
HTA9_3_88	0	0	0	1	1	1
HTA9_7_41	1	1	1	1	1	1
HTA9_7_44	1	1	1	1	1	1
HTA9_7_71	0	0	0	1	1	1
HTA9_8_1	1	1	1	1	1	1
HTA9_8_33	1	1	1	1	1	1
HTA9_8_54	0	0	0	1	1	1
HTA9_9_41	1	1	1	1	1	1
HTA9_9_42	1	1	1	1	1	1
HTA9_9_64	0	0	0	1	1	1
HTA9_10_32	1	1	1	1	1	1
HTA9_10_36	1	1	1	1	1	1
HTA9_10_57	0	0	0	1	1	1
HTA9_11_31	1	1	1	1	1	1
HTA9_11_32	1	1	1	1	1	1
HTA9_11_51	0	0	0	1	1	1
HTA9_12_40	1	1	1	1	1	1
HTA9_12_41	1	1	1	1	1	1
HTA9_12_42	1	1	1	1	1	1
HTA9_12_69	0	0	0	1	1	1
HTA9_13_31	1	1	1	1	1	1
HTA9_13_33	1	1	1	1	1	1
HTA9_13_49	0	0	0	1	1	1
HTA9_14_42	1	1	1	1	1	1
HTA9_14_43	1	1	1	1	1	1
HTA9_14_67	0	0	0	0	1	1
HTA9_14_92	1	1	1	1	1	1
HTA9_15_1	1	1	1	1	1	0
HTA9_15_2	1	1	1	1	1	1
HTA9_15_35	1	1	1	1	1	1
HTA9_16_41	1	1	1	1	1	1
HTA9_16_45	1	1	1	1	1	1
HTA9_17_41	1	1	1	1	1	1
HTA9_17_45	1	1	1	1	1	1
HTA9_18_41	1	1	1	1	1	1
HTA9_18_44	1	1	1	1	1	1
HTA9_23_1	1	1	1	1	1	1
HTA9_23_2	1	1	1	1	1	1
HTA9_24_2	1	1	1	1	1	1
HTA9_24_41	1	1	1	1	1	1
HTA9_25_20	1	1	1	1	1	1
HTA9_25_23	1	1	1	1	1	1
HTA9_25_49	0	0	0	1	1	1
HTA9_26_21	1	1	1	1	1	1
HTA9_26_22	1	1	1	1	1	1
HTA9_26_45	0	0	0	1	1	1
HTA9_27_21	1	1	1	1	1	1
HTA9_27_22	1	1	1	1	1	1
HTA9_27_51	0	0	0	0	1	1
HTA9_28_2	0	0	0	1	1	1
HTA9_28_30	0	0	0	1	1	1
HTA9_29_31	1	1	1	1	1	1
HTA9_29_32	1	1	1	1	1	1
HTA9_30_1	1	1	1	1	1	1
HTA9_30_2	1	1	1	1	1	1
HTA9_30_24	0	0	0	1	1	1
HTA9_32_1	1	1	1	1	1	1
HTA9_32_2	1	1	1	1	1	1
HTA9_32_22	0	0	0	1	1	1
HTA9_34_3	0	0	0	1	1	1
HTA9_34_4	1	1	1	1	1	1
HTA9_34_25	0	0	0	1	1	1
HTA9_36_1	1	1	1	1	1	1
HTA9_36_9	0	0	0	1	1	1
HTA9_38_1	1	1	1	1	1	1
HTA9_38_5	1	1	1	1	1	1
HTA9_38_30	0	0	0	1	1	1
HTA9_40_2	1	1	1	1	1	1
HTA9_40_4	1	1	1	1	1	1
HTA9_41_1	1	1	1	1	1	1
HTA9_42_1	0	0	0	1	1	1
HTA9_42_3	1	1	1	1	1	1
HTA9_43_1	1	1	1	1	1	1
HTA9_43_2	1	1	1	1	1	1
HTA9_44_1	1	1	1	1	1	1
HTA9_44_3	1	1	1	1	1	1
HTA9_45_1	1	1	1	1	1	1
HTA9_45_2	1	1	1	1	1	1

	Counts
BulkRNA-seqLevel1	68
BulkRNA-seqLevel2	65
BulkRNA-seqLevel3	68
BulkRNA-seqLevel4	0
BulkWESLevel1	127
BulkWESLevel2	102
BulkWESLevel3	98
BulkWESLevel4	0
BulkMethylation-seqLevel1	0
BulkMethylation-seqLevel2	0
BulkMethylation-seqLevel3	0
BulkMethylation-seqLevel4	0
HI-C-seqLevel1	0
HI-C-seqLevel2	0
HI-C-seqLevel3	0
HI-C-seqLevel4	0

Assay Matrix: Core Imaging

BiospecimenID	ImagingLevel1	ImagingLevel2	ImagingLevel3Segmentation	ImagingLevel4
HTA9_1_2	1	0	0	0
HTA9_1_3	0	1	1	1
HTA9_1_4	0	1	1	1
HTA9_1_5	0	1	1	1
HTA9_1_17	0	1	1	1
HTA9_1_18	0	1	1	1
HTA9_1_19	0	1	1	1
HTA9_1_24	1	0	0	0
HTA9_1_29	0	1	1	1
HTA9_1_30	0	1	1	1
HTA9_1_31	0	1	1	1
HTA9_1_32	0	1	1	1
HTA9_1_38	1	0	0	0
HTA9_1_39	1	0	0	0
HTA9_1_40	1	0	0	0
HTA9_1_41	1	0	0	0
HTA9_1_42	1	0	0	0
HTA9_1_43	1	0	0	0
HTA9_1_44	1	0	0	0
HTA9_1_45	1	0	0	0
HTA9_1_46	1	0	0	0
HTA9_1_47	1	0	0	0
HTA9_1_48	0	1	1	1
HTA9_1_49	0	1	1	1
HTA9_1_50	0	1	1	1
HTA9_1_51	0	1	1	1
HTA9_1_87	1	0	0	0
HTA9_1_88	1	0	0	0
HTA9_1_89	1	0	0	0
HTA9_1_90	1	0	0	0
HTA9_1_91	1	0	0	0
HTA9_1_92	1	0	0	0
HTA9_1_93	0	1	1	1
HTA9_1_94	0	1	1	1
HTA9_1_98	1	0	0	0
HTA9_1_99	1	0	0	0
HTA9_1_100	1	0	0	0
HTA9_1_101	1	0	0	0
HTA9_1_102	1	0	0	0
HTA9_1_103	1	0	0	0
HTA9_1_104	1	0	0	0
HTA9_1_105	1	0	0	0
HTA9_1_106	1	0	0	0
HTA9_1_107	1	0	0	0
HTA9_1_111	1	0	0	0
HTA9_1_112	0	1	1	1
HTA9_1_113	0	1	1	1
HTA9_1_114	0	1	1	1
HTA9_1_115	0	1	1	1
HTA9_1_116	1	0	0	0
HTA9_1_121	0	1	1	1
HTA9_1_123	0	1	1	1
HTA9_1_124	0	1	1	1
HTA9_1_127	1	0	0	0
HTA9_1_133	0	1	0	0
HTA9_1_134	1	0	0	0
HTA9_1_136	1	0	0	0
HTA9_1_146	1	0	0	0
HTA9_1_147	1	0	0	0
HTA9_1_148	1	0	0	0
HTA9_1_149	1	0	0	0
HTA9_1_150	1	0	0	0
HTA9_1_151	1	0	0	0
HTA9_1_152	1	0	0	0
HTA9_1_153	1	0	0	0
HTA9_1_154	1	0	0	0
HTA9_1_155	1	0	0	0
HTA9_1_156	1	0	0	0
HTA9_1_157	1	0	0	0
HTA9_1_158	0	1	0	0
HTA9_1_164	0	1	1	1
HTA9_2_10	1	0	0	0
HTA9_2_17	1	0	0	0
HTA9_2_20	1	0	0	0
HTA9_2_27	1	0	0	0
HTA9_2_31	1	0	0	0
HTA9_2_39	1	0	0	0
HTA9_2_50	1	0	0	0
HTA9_2_58	1	0	0	0
HTA9_2_78	1	0	0	0
HTA9_2_79	1	0	0	0
HTA9_2_80	1	0	0	0
HTA9_2_81	1	0	0	0
HTA9_2_82	1	0	0	0
HTA9_2_84	1	0	0	0
HTA9_2_85	1	0	0	0
HTA9_2_86	1	0	0	0
HTA9_2_87	1	0	0	0
HTA9_2_89	1	0	0	0
HTA9_2_90	0	1	1	1
HTA9_2_91	0	1	1	1
HTA9_2_92	0	1	1	1
HTA9_2_93	0	1	1	1
HTA9_2_94	1	0	0	0
HTA9_2_95	1	0	0	0
HTA9_2_96	0	1	1	1
HTA9_2_97	0	1	1	1
HTA9_2_98	0	1	1	1
HTA9_2_99	0	1	1	1
HTA9_2_100	1	0	0	0
HTA9_3_10	1	0	0	0
HTA9_3_11	0	1	1	1
HTA9_3_12	0	1	1	1
HTA9_3_13	0	1	1	1
HTA9_3_14	0	1	1	1
HTA9_3_15	1	0	0	0
HTA9_3_20	1	0	0	0
HTA9_3_21	0	1	1	1
HTA9_3_22	0	1	1	1
HTA9_3_23	0	1	1	1
HTA9_3_24	0	1	1	1
HTA9_3_25	1	0	0	0
HTA9_3_31	1	0	0	0
HTA9_3_33	0	1	1	1
HTA9_3_37	0	1	1	1
HTA9_3_39	1	0	0	0
HTA9_3_41	1	0	0	0
HTA9_3_50	1	0	0	0
HTA9_3_52	0	1	1	1
HTA9_3_56	0	1	1	1
HTA9_3_58	1	0	0	0
HTA9_3_78	1	0	0	0
HTA9_3_79	1	0	0	0
HTA9_3_80	1	0	0	0
HTA9_3_81	1	0	0	0
HTA9_3_82	1	0	0	0
HTA9_3_83	1	0	0	0
HTA9_3_84	1	0	0	0
HTA9_3_85	1	0	0	0
HTA9_3_86	1	0	0	0
HTA9_3_87	1	0	0	0
HTA9_3_95	1	0	0	0
HTA9_3_96	1	0	0	0
HTA9_3_97	1	0	0	0
HTA9_3_98	1	0	0	0
HTA9_3_99	1	0	0	0
HTA9_3_100	1	0	0	0
HTA9_3_101	1	0	0	0
HTA9_3_102	1	0	0	0
HTA9_3_103	1	0	0	0
HTA9_3_104	1	0	0	0
HTA9_3_105	1	0	0	0
HTA9_3_106	1	0	0	0
HTA9_3_107	0	1	1	1
HTA9_3_108	0	1	1	1
HTA9_3_109	0	1	1	1
HTA9_3_110	0	1	1	1
HTA9_3_111	1	0	0	0
HTA9_7_5	1	0	0	0
HTA9_7_6	0	1	1	1
HTA9_7_7	0	1	1	1
HTA9_7_11	0	1	0	0
HTA9_7_12	1	0	0	0
HTA9_7_13	1	0	0	0
HTA9_7_14	0	1	1	1
HTA9_7_15	0	1	1	1
HTA9_7_19	0	1	0	0
HTA9_7_20	1	0	0	0
HTA9_7_22	1	0	0	0
HTA9_7_31	1	0	0	0
HTA9_7_33	0	1	1	1
HTA9_7_47	1	0	0	0
HTA9_7_48	1	0	0	0
HTA9_7_49	1	0	0	0
HTA9_7_50	1	0	0	0
HTA9_7_51	1	0	0	0
HTA9_7_52	1	0	0	0
HTA9_7_53	1	0	0	0
HTA9_7_54	1	0	0	0
HTA9_7_55	1	0	0	0
HTA9_7_56	1	0	0	0
HTA9_7_57	1	0	0	0
HTA9_7_58	1	0	0	0
HTA9_7_59	1	0	0	0
HTA9_7_60	1	0	0	0
HTA9_7_61	1	0	0	0
HTA9_7_62	1	0	0	0
HTA9_7_63	1	0	0	0
HTA9_7_64	1	0	0	0
HTA9_7_65	1	0	0	0
HTA9_7_66	1	0	0	0
HTA9_7_67	1	0	0	0
HTA9_7_68	1	0	0	0
HTA9_7_69	1	0	0	0
HTA9_7_70	1	0	0	0
HTA9_7_74	0	1	1	1
HTA9_7_76	0	1	0	0
HTA9_8_4	1	0	0	0
HTA9_8_5	0	1	1	1
HTA9_8_6	0	1	1	1
HTA9_8_10	0	1	0	0
HTA9_8_11	1	0	0	0
HTA9_8_12	1	0	0	0
HTA9_8_13	0	1	1	1
HTA9_8_14	0	1	1	1
HTA9_8_18	0	1	0	0
HTA9_8_19	1	0	0	0
HTA9_8_21	1	0	0	0
HTA9_8_23	0	1	1	1
HTA9_8_37	1	0	0	0
HTA9_8_38	1	0	0	0
HTA9_8_39	1	0	0	0
HTA9_8_40	1	0	0	0
HTA9_8_41	1	0	0	0
HTA9_8_42	1	0	0	0
HTA9_8_43	1	0	0	0
HTA9_8_44	1	0	0	0
HTA9_8_45	1	0	0	0
HTA9_8_46	1	0	0	0
HTA9_8_47	1	0	0	0
HTA9_8_48	1	0	0	0
HTA9_8_49	1	0	0	0
HTA9_8_50	1	0	0	0
HTA9_8_51	1	0	0	0
HTA9_8_52	1	0	0	0
HTA9_8_53	1	0	0	0
HTA9_8_55	0	1	1	1
HTA9_8_56	0	1	1	1
HTA9_8_58	0	1	0	0
HTA9_8_59	0	1	0	0
HTA9_9_5	1	0	0	0
HTA9_9_6	0	1	1	1
HTA9_9_7	0	1	1	1
HTA9_9_11	0	1	0	0
HTA9_9_12	1	0	0	0
HTA9_9_13	1	0	0	0
HTA9_9_14	0	1	1	1
HTA9_9_15	0	1	1	1
HTA9_9_19	0	1	0	0
HTA9_9_20	1	0	0	0
HTA9_9_22	1	0	0	0
HTA9_9_31	1	0	0	0
HTA9_9_33	0	1	1	1
HTA9_9_47	1	0	0	0
HTA9_9_48	1	0	0	0
HTA9_9_49	1	0	0	0
HTA9_9_50	1	0	0	0
HTA9_9_51	1	0	0	0
HTA9_9_52	1	0	0	0
HTA9_9_53	1	0	0	0
HTA9_9_54	1	0	0	0
HTA9_9_55	1	0	0	0
HTA9_9_56	1	0	0	0
HTA9_9_57	1	0	0	0
HTA9_9_58	1	0	0	0
HTA9_9_59	1	0	0	0
HTA9_9_60	1	0	0	0
HTA9_9_61	1	0	0	0
HTA9_9_62	1	0	0	0
HTA9_9_63	1	0	0	0
HTA9_9_66	0	1	1	1
HTA9_9_67	0	1	1	1
HTA9_9_68	0	1	0	0
HTA9_9_69	0	1	0	0
HTA9_10_5	1	0	0	0
HTA9_10_6	0	1	1	1
HTA9_10_7	0	1	1	1
HTA9_10_11	0	1	0	0
HTA9_10_12	1	0	0	0
HTA9_10_13	1	0	0	0
HTA9_10_14	0	1	1	1
HTA9_10_15	0	1	1	1
HTA9_10_19	0	1	0	0
HTA9_10_20	1	0	0	0
HTA9_10_22	1	0	0	0
HTA9_10_24	0	1	1	1
HTA9_10_39	1	0	0	0
HTA9_10_40	1	0	0	0
HTA9_10_41	1	0	0	0
HTA9_10_42	1	0	0	0
HTA9_10_43	1	0	0	0
HTA9_10_44	1	0	0	0
HTA9_10_45	1	0	0	0
HTA9_10_46	1	0	0	0
HTA9_10_47	1	0	0	0
HTA9_10_48	1	0	0	0
HTA9_10_49	1	0	0	0
HTA9_10_50	1	0	0	0
HTA9_10_51	1	0	0	0
HTA9_10_52	1	0	0	0
HTA9_10_53	1	0	0	0
HTA9_10_54	1	0	0	0
HTA9_10_55	1	0	0	0
HTA9_10_56	1	0	0	0
HTA9_10_58	0	1	1	1
HTA9_10_59	0	1	1	1
HTA9_10_61	0	1	0	0
HTA9_10_62	0	1	0	0
HTA9_11_4	1	0	0	0
HTA9_11_5	0	1	1	1
HTA9_11_6	0	1	1	1
HTA9_11_10	0	1	0	0
HTA9_11_11	1	0	0	0
HTA9_11_12	1	0	0	0
HTA9_11_13	0	1	1	1
HTA9_11_14	0	1	1	1
HTA9_11_18	0	1	0	0
HTA9_11_19	1	0	0	0
HTA9_11_21	1	0	0	0
HTA9_11_23	0	1	1	1
HTA9_11_35	1	0	0	0
HTA9_11_36	1	0	0	0
HTA9_11_37	1	0	0	0
HTA9_11_38	1	0	0	0
HTA9_11_39	1	0	0	0
HTA9_11_40	1	0	0	0
HTA9_11_41	1	0	0	0
HTA9_11_42	1	0	0	0
HTA9_11_43	1	0	0	0
HTA9_11_44	1	0	0	0
HTA9_11_45	1	0	0	0
HTA9_11_46	1	0	0	0
HTA9_11_47	1	0	0	0
HTA9_11_48	1	0	0	0
HTA9_11_49	1	0	0	0
HTA9_11_50	1	0	0	0
HTA9_11_53	0	1	1	1
HTA9_11_54	0	1	1	1
HTA9_11_55	0	1	0	0
HTA9_12_1	0	1	1	1
HTA9_12_2	0	1	1	1
HTA9_12_3	0	1	1	1
HTA9_12_4	0	1	1	1
HTA9_12_5	1	0	0	0
HTA9_12_11	0	1	0	0
HTA9_12_12	1	0	0	0
HTA9_12_13	1	0	0	0
HTA9_12_19	0	1	0	0
HTA9_12_20	1	0	0	0
HTA9_12_21	1	0	0	0
HTA9_12_24	0	1	1	1
HTA9_12_27	0	1	0	0
HTA9_12_28	1	0	0	0
HTA9_12_30	1	0	0	0
HTA9_12_45	1	0	0	0
HTA9_12_46	1	0	0	0
HTA9_12_47	1	0	0	0
HTA9_12_48	1	0	0	0
HTA9_12_49	1	0	0	0
HTA9_12_50	1	0	0	0
HTA9_12_51	1	0	0	0
HTA9_12_52	1	0	0	0
HTA9_12_53	1	0	0	0
HTA9_12_54	1	0	0	0
HTA9_12_55	1	0	0	0
HTA9_12_56	1	0	0	0
HTA9_12_57	1	0	0	0
HTA9_12_58	1	0	0	0
HTA9_12_59	1	0	0	0
HTA9_12_60	1	0	0	0
HTA9_12_61	1	0	0	0
HTA9_12_62	1	0	0	0
HTA9_12_63	1	0	0	0
HTA9_12_64	1	0	0	0
HTA9_12_65	1	0	0	0
HTA9_12_66	1	0	0	0
HTA9_12_67	1	0	0	0
HTA9_12_68	1	0	0	0
HTA9_12_70	0	1	1	1
HTA9_12_75	0	1	1	1
HTA9_12_79	0	1	0	0
HTA9_12_80	0	1	0	0
HTA9_13_4	1	0	0	0
HTA9_13_5	0	1	1	1
HTA9_13_6	0	1	1	1
HTA9_13_10	0	1	0	0
HTA9_13_11	1	0	0	0
HTA9_13_12	1	0	0	0
HTA9_13_13	0	1	1	1
HTA9_13_14	0	1	1	1
HTA9_13_18	0	1	0	0
HTA9_13_19	1	0	0	0
HTA9_13_21	1	0	0	0
HTA9_13_23	0	1	1	1
HTA9_13_37	1	0	0	0
HTA9_13_38	1	0	0	0
HTA9_13_39	1	0	0	0
HTA9_13_40	1	0	0	0
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HTA9_32_6	1	0	0	0
HTA9_32_7	1	0	0	0
HTA9_32_8	1	0	0	0
HTA9_32_9	1	0	0	0
HTA9_32_10	1	0	0	0
HTA9_32_11	1	0	0	0
HTA9_32_12	1	0	0	0
HTA9_32_13	1	0	0	0
HTA9_32_14	1	0	0	0
HTA9_32_15	1	0	0	0
HTA9_32_16	1	0	0	0
HTA9_32_17	1	0	0	0
HTA9_32_18	1	0	0	0
HTA9_32_20	1	0	0	0
HTA9_32_23	0	1	0	0
HTA9_32_26	0	1	0	0
HTA9_34_6	1	0	0	0
HTA9_34_7	1	0	0	0
HTA9_34_8	1	0	0	0
HTA9_34_9	1	0	0	0
HTA9_34_10	1	0	0	0
HTA9_34_11	1	0	0	0
HTA9_34_12	1	0	0	0
HTA9_34_13	1	0	0	0
HTA9_34_14	1	0	0	0
HTA9_34_15	1	0	0	0
HTA9_34_16	1	0	0	0
HTA9_34_17	1	0	0	0
HTA9_34_18	1	0	0	0
HTA9_34_19	1	0	0	0
HTA9_34_20	1	0	0	0
HTA9_34_21	1	0	0	0
HTA9_34_22	1	0	0	0
HTA9_34_26	0	1	0	0
HTA9_34_27	0	1	1	1
HTA9_34_28	0	1	1	1
HTA9_36_4	1	0	0	0
HTA9_36_5	1	0	0	0
HTA9_36_6	1	0	0	0
HTA9_36_11	0	1	0	0
HTA9_36_12	0	1	1	1
HTA9_38_7	1	0	0	0
HTA9_38_8	1	0	0	0
HTA9_38_9	1	0	0	0
HTA9_38_10	1	0	0	0
HTA9_38_11	1	0	0	0
HTA9_38_12	1	0	0	0
HTA9_38_13	1	0	0	0
HTA9_38_14	1	0	0	0
HTA9_38_15	1	0	0	0
HTA9_38_16	1	0	0	0
HTA9_38_17	1	0	0	0
HTA9_38_18	1	0	0	0
HTA9_38_19	1	0	0	0
HTA9_38_20	1	0	0	0
HTA9_38_21	1	0	0	0
HTA9_38_22	1	0	0	0
HTA9_38_23	1	0	0	0
HTA9_38_24	1	0	0	0
HTA9_38_25	1	0	0	0
HTA9_38_26	1	0	0	0
HTA9_38_27	1	0	0	0
HTA9_38_28	1	0	0	0
HTA9_38_29	1	0	0	0
HTA9_38_31	0	1	0	0
HTA9_40_5	1	0	0	0
HTA9_40_6	1	0	0	0
HTA9_40_7	1	0	0	0
HTA9_40_8	1	0	0	0
HTA9_40_9	1	0	0	0
HTA9_40_10	1	0	0	0
HTA9_40_11	1	0	0	0
HTA9_40_12	1	0	0	0
HTA9_40_13	1	0	0	0
HTA9_40_14	1	0	0	0
HTA9_40_15	1	0	0	0
HTA9_40_16	1	0	0	0
HTA9_40_17	1	0	0	0
HTA9_40_18	1	0	0	0
HTA9_40_19	1	0	0	0
HTA9_40_20	1	0	0	0
HTA9_40_21	1	0	0	0
HTA9_40_22	1	0	0	0
HTA9_40_23	1	0	0	0
HTA9_40_24	1	0	0	0
HTA9_40_25	1	0	0	0
HTA9_40_26	1	0	0	0
HTA9_40_27	1	0	0	0
HTA9_40_28	1	0	0	0
HTA9_40_29	1	0	0	0
HTA9_40_30	1	0	0	0
HTA9_40_31	1	0	0	0
HTA9_40_32	0	1	0	0
HTA9_41_3	1	0	0	0
HTA9_41_4	1	0	0	0
HTA9_41_5	1	0	0	0
HTA9_41_6	1	0	0	0
HTA9_41_7	1	0	0	0
HTA9_41_8	1	0	0	0
HTA9_41_9	1	0	0	0
HTA9_41_10	1	0	0	0
HTA9_41_11	1	0	0	0
HTA9_41_12	1	0	0	0
HTA9_41_14	0	1	0	0
HTA9_42_4	1	0	0	0
HTA9_42_5	1	0	0	0
HTA9_42_6	1	0	0	0
HTA9_42_7	1	0	0	0
HTA9_42_8	1	0	0	0
HTA9_42_9	1	0	0	0
HTA9_42_10	1	0	0	0
HTA9_42_11	1	0	0	0
HTA9_42_12	1	0	0	0
HTA9_42_13	1	0	0	0
HTA9_42_14	1	0	0	0
HTA9_42_15	1	0	0	0
HTA9_42_16	1	0	0	0
HTA9_42_17	1	0	0	0
HTA9_42_18	1	0	0	0
HTA9_42_19	1	0	0	0
HTA9_42_20	1	0	0	0
HTA9_42_21	1	0	0	0
HTA9_42_22	1	0	0	0
HTA9_42_26	0	1	0	0
HTA9_42_27	0	1	0	0
HTA9_42_28	0	1	0	0
HTA9_42_29	0	1	0	0
HTA9_42_30	0	1	1	1
HTA9_43_4	1	0	0	0
HTA9_43_5	1	0	0	0
HTA9_43_6	1	0	0	0
HTA9_43_7	1	0	0	0
HTA9_43_8	1	0	0	0
HTA9_43_9	1	0	0	0
HTA9_43_10	1	0	0	0
HTA9_43_11	1	0	0	0
HTA9_43_12	1	0	0	0
HTA9_43_13	1	0	0	0
HTA9_43_14	1	0	0	0
HTA9_43_15	1	0	0	0
HTA9_43_16	1	0	0	0
HTA9_43_17	1	0	0	0
HTA9_43_18	1	0	0	0
HTA9_43_19	1	0	0	0
HTA9_43_20	1	0	0	0
HTA9_43_21	1	0	0	0
HTA9_43_22	1	0	0	0
HTA9_43_23	0	1	0	0
HTA9_43_24	0	1	0	0
HTA9_43_25	0	1	0	0
HTA9_43_26	0	1	0	0
HTA9_44_4	1	0	0	0
HTA9_44_5	1	0	0	0
HTA9_44_6	1	0	0	0
HTA9_44_7	1	0	0	0
HTA9_44_8	1	0	0	0
HTA9_44_9	1	0	0	0
HTA9_44_10	1	0	0	0
HTA9_44_11	1	0	0	0
HTA9_44_12	1	0	0	0
HTA9_44_13	1	0	0	0
HTA9_44_14	1	0	0	0
HTA9_44_15	1	0	0	0
HTA9_44_16	1	0	0	0
HTA9_44_17	1	0	0	0
HTA9_44_18	1	0	0	0
HTA9_44_19	1	0	0	0
HTA9_44_20	1	0	0	0
HTA9_44_21	1	0	0	0
HTA9_44_22	1	0	0	0
HTA9_44_23	1	0	0	0
HTA9_44_24	1	0	0	0
HTA9_44_27	0	1	0	0
HTA9_44_28	0	1	0	0
HTA9_45_4	1	0	0	0
HTA9_45_5	1	0	0	0
HTA9_45_6	1	0	0	0
HTA9_45_7	1	0	0	0
HTA9_45_8	1	0	0	0
HTA9_45_9	1	0	0	0
HTA9_45_10	1	0	0	0
HTA9_45_11	1	0	0	0
HTA9_45_12	1	0	0	0
HTA9_45_13	1	0	0	0
HTA9_45_14	1	0	0	0
HTA9_45_15	1	0	0	0
HTA9_45_16	1	0	0	0
HTA9_45_17	1	0	0	0
HTA9_45_18	1	0	0	0
HTA9_45_19	1	0	0	0
HTA9_45_20	1	0	0	0
HTA9_45_21	1	0	0	0
HTA9_45_23	0	1	1	1
HTA9_45_24	0	1	1	1
HTA9_45_25	0	1	0	0

	Counts
ImagingLevel1	779
ImagingLevel2	271
ImagingLevel3Image	0
ImagingLevel3Channels	0
ImagingLevel3Segmentation	194
ImagingLevel4	194
SRRSImagingLevel2	0

Assay Matrix: Other

BiospecimenID	ElectronMicroscopyLevel1	ElectronMicroscopyLevel2	ElectronMicroscopyLevel3	ElectronMicroscopyLevel4	RPPALevel2	RPPALevel3	RPPALevel4
HTA9_1_8	1	1	1	1	0	0	0
HTA9_1_22	1	1	1	1	0	0	0
HTA9_1_23	0	0	0	0	1	1	1
HTA9_1_35	1	1	1	1	0	0	0
HTA9_1_36	0	0	0	0	1	1	1
HTA9_1_119	1	1	0	1	0	0	0
HTA9_1_120	0	0	0	0	1	1	1
HTA9_1_159	1	1	0	1	0	0	0
HTA9_1_161	0	0	0	0	1	1	1
HTA9_2_68	1	1	0	1	0	0	0
HTA9_2_69	1	1	0	1	0	0	0
HTA9_2_76	0	0	0	0	1	1	1
HTA9_2_77	0	0	0	0	1	1	1
HTA9_3_68	1	1	0	1	0	0	0
HTA9_3_69	1	1	0	1	0	0	0
HTA9_3_76	0	0	0	0	1	1	1
HTA9_3_77	0	0	0	0	1	1	1
HTA9_3_114	1	1	0	1	0	0	0
HTA9_3_115	0	0	0	0	1	1	1
HTA9_7_40	1	1	0	1	0	0	0
HTA9_7_45	0	0	0	0	1	1	1
HTA9_7_46	0	0	0	0	1	1	1
HTA9_8_29	1	1	0	1	0	0	0
HTA9_8_30	1	1	0	1	0	0	0
HTA9_8_35	0	0	0	0	1	1	1
HTA9_8_36	0	0	0	0	1	1	1
HTA9_9_39	1	1	0	1	0	0	0
HTA9_9_40	1	1	0	1	0	0	0
HTA9_9_45	0	0	0	0	1	1	1
HTA9_9_46	0	0	0	0	1	1	1
HTA9_10_30	1	1	0	1	0	0	0
HTA9_10_31	1	1	0	0	0	0	0
HTA9_10_37	0	0	0	0	1	1	1
HTA9_11_29	1	1	0	1	0	0	0
HTA9_11_30	1	1	0	1	0	0	0
HTA9_11_33	0	0	0	0	1	1	1
HTA9_11_34	0	0	0	0	1	1	1
HTA9_12_38	1	1	0	1	0	0	0
HTA9_12_39	1	1	0	1	0	0	0
HTA9_12_43	0	0	0	0	1	1	1
HTA9_12_44	0	0	0	0	1	1	1
HTA9_13_29	1	1	0	1	0	0	0
HTA9_13_35	0	0	0	0	1	1	1
HTA9_13_36	0	0	0	0	1	1	1
HTA9_14_39	1	1	0	1	0	0	0
HTA9_14_40	1	1	0	1	0	0	0
HTA9_14_45	0	0	0	0	1	1	1
HTA9_14_46	0	0	0	0	1	1	1
HTA9_14_78	1	1	0	1	0	0	0
HTA9_15_31	1	1	0	0	0	0	0
HTA9_15_32	1	1	0	1	0	0	0
HTA9_15_33	1	1	0	1	0	0	0
HTA9_15_36	0	0	0	0	1	1	1
HTA9_15_37	0	0	0	0	1	1	1
HTA9_16_39	1	1	0	1	0	0	0
HTA9_16_40	1	1	0	1	0	0	0
HTA9_16_47	0	0	0	0	1	1	1
HTA9_16_48	0	0	0	0	1	1	1
HTA9_17_39	1	1	0	1	0	0	0
HTA9_17_40	1	1	0	1	0	0	0
HTA9_17_46	0	0	0	0	1	1	1
HTA9_17_47	0	0	0	0	1	1	1
HTA9_18_39	1	1	0	1	0	0	0
HTA9_18_40	1	1	0	1	0	0	0
HTA9_18_46	0	0	0	0	1	1	1
HTA9_18_47	0	0	0	0	1	1	1
HTA9_23_19	1	1	0	0	0	0	0
HTA9_23_22	0	0	0	0	1	1	1
HTA9_24_38	1	1	0	0	0	0	0
HTA9_24_39	1	1	0	0	0	0	0
HTA9_24_43	0	0	0	0	1	1	1
HTA9_24_44	0	0	0	0	1	1	1
HTA9_25_19	1	1	0	1	0	0	0
HTA9_25_24	0	0	0	0	1	1	1
HTA9_26_19	1	1	0	1	0	0	0
HTA9_26_20	1	1	0	1	0	0	0
HTA9_26_23	0	0	0	0	1	1	1
HTA9_26_24	0	0	0	0	1	1	1
HTA9_27_19	1	1	0	1	0	0	0
HTA9_27_20	1	1	0	1	0	0	0
HTA9_28_29	1	1	0	0	0	0	0
HTA9_28_31	0	0	0	0	1	1	1
HTA9_28_32	0	0	0	0	1	1	1
HTA9_29_29	1	1	0	1	0	0	0
HTA9_29_30	1	1	0	1	0	0	0
HTA9_29_33	0	0	0	0	1	1	1
HTA9_29_34	0	0	0	0	1	1	1
HTA9_30_3	1	1	0	0	0	0	0
HTA9_30_6	0	0	0	0	1	1	1
HTA9_30_7	0	0	0	0	1	1	1
HTA9_32_21	0	0	0	0	1	1	1
HTA9_34_23	0	0	0	0	1	1	1
HTA9_34_24	0	0	0	0	1	1	1
HTA9_36_7	0	0	0	0	1	1	1
HTA9_36_8	0	0	0	0	1	1	1
HTA9_41_13	0	0	0	0	1	1	1
HTA9_42_23	0	0	0	0	1	1	1
HTA9_44_25	0	0	0	0	1	1	1
HTA9_45_22	0	0	0	0	1	1	1

	Counts
10xVisiumSpatialTranscriptomics-RNA-seqLevel1	0
10xVisiumSpatialTranscriptomics-RNA-seqLevel2	0
10xVisiumSpatialTranscriptomics-AuxiliaryFiles	0
10xVisiumSpatialTranscriptomics-RNA-seqLevel3	0
10xVisiumSpatialTranscriptomics-RNA-seqLevel4	0
Slide-seqLevel1	0
Slide-seqLevel2	0
Slide-seqLevel3	0
ElectronMicroscopyLevel1	46
ElectronMicroscopyLevel2	46
ElectronMicroscopyLevel3	3
ElectronMicroscopyLevel4	39
MassSpectrometryLevel1	0
MassSpectrometryLevel2	0
MassSpectrometryLevel3	0
MassSpectrometryLevel4	0
MassSpectrometryAuxiliaryFile	0
RPPALevel1	0
RPPALevel2	53
RPPALevel3	53
RPPALevel4	53
OtherAssay	0
ExSeqMinimal	0
AccessoryManifest	0

gantt dateFormat X axisFormat %s section HTA9_1 Hormone Therapy:,0,1706 section HTA9_1 Hormone Therapy:,1706,1970 section HTA9_1 Targeted Molecular Therapy:,1706,1982 section HTA9_1 Other:,1719,1993 section HTA9_1 Targeted Molecular Therapy:,1736,1983 section HTA9_1 Other:,1775,1805 section HTA9_1 Other:,1860,2190 section HTA9_1 Immunotherapy (Including Vaccines):,1991,2190 section HTA9_1 Radiation Therapy NOS:,1993,2007 section HTA9_1 Chemotherapy:,2008,2190 section HTA9_1 Hormone Therapy:,2211,2574 section HTA9_1 Immunotherapy (Including Vaccines):,2211,2574 section HTA9_1 Radiation Therapy NOS:,2211,2222 section HTA9_1 Chemotherapy:,2230,2257 section HTA9_1 Chemotherapy:,2257,2261 section HTA9_1 Chemotherapy:,2278,2860 section HTA9_1 Other:,2407,2449 section HTA9_1 Other:,2474,2574 section HTA9_1 Other:,2539,2890 section HTA9_1 Immunotherapy (Including Vaccines):,2575,2841 section HTA9_1 Hormone Therapy:,2575,2855 section HTA9_1 Hormone Therapy:,2575,2861 section HTA9_1 Other:,2575,2874 section HTA9_1 Radiation Therapy NOS:,2642,2650 section HTA9_1 Radiation Therapy NOS:,2663,2667 section HTA9_1 Radiation Therapy NOS:,2677,2681 section HTA9_1 Chemotherapy:,2862,2939 section HTA9_1 Chemotherapy:,2960,3030 section HTA9_1 Hormone Therapy:,3044,3099 section HTA9_1 Targeted Molecular Therapy:,3076,3107 section HTA9_1 Hormone Therapy:,3099,3160 section HTA9_1 Hormone Therapy:,3107,3155 section HTA9_1 Other:,3110,3111 section HTA9_1 Targeted Molecular Therapy:,3111,3154 section HTA9_1 Hormone Therapy:,3160,3184 section HTA9_1 Hormone Therapy:,3170,3459 section HTA9_1 Targeted Molecular Therapy:,3170,3459 section HTA9_1 Blood Other Acquisition Method (2):milestone,0,0 section HTA9_1 Blood Other Acquisition Method:milestone,22,22 section HTA9_1 Blood Other Acquisition Method:milestone,43,43 section HTA9_1 Blood Other Acquisition Method:milestone,57,57 section HTA9_1 Blood Other Acquisition Method:milestone,85,85 section HTA9_1 Blood Other Acquisition Method:milestone,105,105 section HTA9_1 Blood Other Acquisition Method:milestone,172,172 section HTA9_1 Blood Other Acquisition Method:milestone,208,208 section HTA9_1 Blood Other Acquisition Method:milestone,231,231 section HTA9_1 Blood Other Acquisition Method:milestone,243,243 section HTA9_1 Blood Other Acquisition Method:milestone,266,266 section HTA9_1 Blood Other Acquisition Method:milestone,288,288 section HTA9_1 Blood Other Acquisition Method:milestone,294,294 section HTA9_1 Blood Other Acquisition Method:milestone,295,295 section HTA9_1 Blood Other Acquisition Method:milestone,297,297 section HTA9_1 Blood Other Acquisition Method:milestone,298,298 section HTA9_1 Blood Other Acquisition Method:milestone,329,329 section HTA9_1 Blood Other Acquisition Method:milestone,350,350 section HTA9_1 Blood Other Acquisition Method:milestone,371,371 section HTA9_1 Blood Other Acquisition Method:milestone,392,392 section HTA9_1 Blood Other Acquisition Method:milestone,413,413 section HTA9_1 Blood Other Acquisition Method:milestone,441,441 section HTA9_1 Blood Other Acquisition Method:milestone,469,469 section HTA9_1 Blood Other Acquisition Method:milestone,553,553 section HTA9_1 Blood Other Acquisition Method:milestone,616,616 section HTA9_1 Blood Other Acquisition Method:milestone,658,658 section HTA9_1 Blood Other Acquisition Method:milestone,707,707 section HTA9_1 Blood Other Acquisition Method:milestone,728,728 section HTA9_1 Blood Other Acquisition Method:milestone,749,749 section HTA9_1 Blood Other Acquisition Method:milestone,774,774 section HTA9_1 Blood Other Acquisition Method:milestone,854,854 section HTA9_1 Blood Other Acquisition Method:milestone,875,875 section HTA9_1 Blood Other Acquisition Method:milestone,896,896 section HTA9_1 Blood Other Acquisition Method:milestone,1120,1120 section HTA9_1 Bone NOS Biopsy:milestone,0,0 section HTA9_1 Breast NOS Surgical Resection:milestone,0,0 section HTA9_1 Liver Biopsy (2):milestone,0,0 section HTA9_1 Liver Biopsy (4):milestone,243,243 section HTA9_1 Liver Biopsy (5):milestone,1273,1273 section HTA9_1 Liver Biopsy (7):milestone,1758,1758 section HTA9_10 Targeted Molecular Therapy:,0,308 section HTA9_10 Immunotherapy (Including Vaccines):,28,308 section HTA9_10 Blood Blood draw:milestone,0,0 section HTA9_10 Intrathoracic lymph nodes Biopsy (5):milestone,0,0 section HTA9_10 Lymph nodes of axilla or arm Biopsy (7):milestone,0,0 section HTA9_11 Targeted Molecular Therapy:,0,47 section HTA9_11 Immunotherapy (Including Vaccines):,28,56 section HTA9_11 Blood Blood draw:milestone,0,0 section HTA9_11 Liver Biopsy (5):milestone,0,0 section HTA9_11 Liver Biopsy (4):milestone,37,37 section HTA9_12 Targeted Molecular Therapy:,0,174 section HTA9_12 Immunotherapy (Including Vaccines):,26,145 section HTA9_12 Blood Blood draw:milestone,0,0 section HTA9_12 Intrathoracic lymph nodes Biopsy (5):milestone,0,0 section HTA9_12 Intrathoracic lymph nodes Biopsy (6):milestone,26,26 section HTA9_12 Lymph nodes of axilla or arm Biopsy (3):milestone,0,0 section HTA9_13 Targeted Molecular Therapy:,0,38 section HTA9_13 Immunotherapy (Including Vaccines):milestone,28,28 section HTA9_13 Blood Blood draw:milestone,0,0 section HTA9_13 Connective subcutaneous and other soft tissues NOS Biopsy (7):milestone,0,0 section HTA9_13 Connective subcutaneous and other soft tissues NOS Biopsy (5):milestone,20,20 section HTA9_14 Radiation Therapy NOS:,0,11 section HTA9_14 Hormone Therapy:,17,798 section HTA9_14 Targeted Molecular Therapy:,31,811 section HTA9_14 Other:,45,330 section HTA9_14 Hormone Therapy:,826,1109 section HTA9_14 Targeted Molecular Therapy:,1120,1368 section HTA9_14 Blood Blood draw:milestone,0,0 section HTA9_14 Bone NOS Biopsy (6):milestone,0,0 section HTA9_14 Liver Biopsy (6):milestone,0,0 section HTA9_14 Pelvic bones sacrum coccyx and associated joints Biopsy (3):milestone,0,0 section HTA9_15 Hormone Therapy:,0,175 section HTA9_15 Targeted Molecular Therapy:,28,175 section HTA9_15 Hormone Therapy:,176,266 section HTA9_15 Targeted Molecular Therapy:,267,687 section HTA9_15 Hormone Therapy:,267,696 section HTA9_15 Hormone Therapy:,697,787 section HTA9_15 Targeted Molecular Therapy:,788,1351 section HTA9_15 Hormone Therapy:,788,1351 section HTA9_15 Radiation Therapy NOS:,1260,1271 section HTA9_15 Hormone Therapy:,1375,1564 section HTA9_15 Chemotherapy:,1613,1687 section HTA9_15 Blood Blood draw:milestone,0,0 section HTA9_15 Bone NOS Biopsy (2):milestone,0,0 section HTA9_15 Liver Biopsy (5):milestone,0,0 section HTA9_15 Liver Biopsy (8):milestone,98,98 section HTA9_16 Targeted Molecular Therapy:,0,17 section HTA9_16 Blood Blood draw:milestone,0,0 section HTA9_16 Liver Biopsy:milestone,0,0 section HTA9_16 Lymph nodes of axilla or arm Biopsy (7):milestone,0,0 section HTA9_16 Lymph nodes of axilla or arm Biopsy (7):milestone,22,22 section HTA9_17 Targeted Molecular Therapy:,0,454 section HTA9_17 Immunotherapy (Including Vaccines):,28,462 section HTA9_17 Blood Blood draw:milestone,0,0 section HTA9_17 Lymph nodes of axilla or arm Biopsy (7):milestone,0,0 section HTA9_17 Lymph nodes of axilla or arm Biopsy (7):milestone,24,24 section HTA9_18 Targeted Molecular Therapy:,0,56 section HTA9_18 Immunotherapy (Including Vaccines):milestone,28,28 section HTA9_18 Adrenal gland NOS Biopsy (8):milestone,0,0 section HTA9_18 Adrenal gland NOS Biopsy (8):milestone,21,21 section HTA9_18 Blood Blood draw:milestone,0,0 section HTA9_2 Hormone Therapy:,0,56 section HTA9_2 Targeted Molecular Therapy:,9,56 section HTA9_2 Blood Other Acquisition Method:milestone,0,0 section HTA9_2 Lymph node NOS Biopsy (7):milestone,0,0 section HTA9_2 Lymph nodes of axilla or arm Biopsy (5):milestone,0,0 section HTA9_23 Hormone Therapy:,0,1266 section HTA9_23 Hormone Therapy:,1287,1839 section HTA9_23 Targeted Molecular Therapy:,1287,1839 section HTA9_23 Blood draw:milestone,0,0 section HTA9_23 Bone NOS Biopsy (4):milestone,0,0 section HTA9_23 Bone NOS Biopsy (2):milestone,585,585 section HTA9_23 Pelvic bones sacrum coccyx and associated joints Biopsy:milestone,0,0 section HTA9_23 Pelvic bones sacrum coccyx and associated joints Biopsy:milestone,585,585 section HTA9_24 Hormone Therapy:,0,55 section HTA9_24 Targeted Molecular Therapy:,64,362 section HTA9_24 Blood draw:milestone,0,0 section HTA9_24 Liver Biopsy (7):milestone,0,0 section HTA9_24 Liver Biopsy (6):milestone,253,253 section HTA9_25 Targeted Molecular Therapy:,0,224 section HTA9_25 Immunotherapy (Including Vaccines):,28,196 section HTA9_25 Blood draw:milestone,0,0 section HTA9_25 Lymph nodes of axilla or arm Biopsy (6):milestone,0,0 section HTA9_25 Lymph nodes of axilla or arm Biopsy (4):milestone,14,14 section HTA9_26 Targeted Molecular Therapy:,0,26 section HTA9_26 Immunotherapy (Including Vaccines):milestone,28,28 section HTA9_26 Blood draw:milestone,0,0 section HTA9_26 Biopsy:milestone,0,0 section HTA9_26 Biopsy:milestone,14,14 section HTA9_26 Liver Biopsy (4):milestone,0,0 section HTA9_26 Liver Biopsy (4):milestone,14,14 section HTA9_27 Targeted Molecular Therapy:,0,260 section HTA9_27 Immunotherapy (Including Vaccines):,34,258 section HTA9_27 Biopsy:milestone,0,0 section HTA9_27 Biopsy:milestone,34,34 section HTA9_27 Brain NOS Surgical Resection:milestone,0,0 section HTA9_27 Lung NOS Biopsy (4):milestone,0,0 section HTA9_27 Lung NOS Blood draw:milestone,0,0 section HTA9_27 Lung NOS Biopsy (4):milestone,34,34 section HTA9_28 Hormone Therapy:,0,1368 section HTA9_28 Targeted Molecular Therapy:,13,1368 section HTA9_28 Targeted Molecular Therapy:,1369,2245 section HTA9_28 Hormone Therapy:,1369,2245 section HTA9_28 Blood draw:milestone,0,0 section HTA9_28 Bone NOS Biopsy (4):milestone,0,0 section HTA9_28 Breast NOS Biopsy (4):milestone,0,0 section HTA9_29 Targeted Molecular Therapy:,0,56 section HTA9_29 Immunotherapy (Including Vaccines):milestone,28,28 section HTA9_29 Lymph nodes of axilla or arm Biopsy (7):milestone,0,0 section HTA9_29 Lymph nodes of axilla or arm Biopsy (7):milestone,20,20 section HTA9_3 Hormone Therapy:,0,232 section HTA9_3 Targeted Molecular Therapy:,31,227 section HTA9_3 Chemotherapy:,254,267 section HTA9_3 Chemotherapy:,308,504 section HTA9_3 Targeted Molecular Therapy:,504,597 section HTA9_3 Hormone Therapy:,504,597 section HTA9_3 Chemotherapy:,504,597 section HTA9_3 Blood Other Acquisition Method:milestone,0,0 section HTA9_3 Liver Biopsy (6):milestone,0,0 section HTA9_3 Liver Biopsy (4):milestone,369,369 section HTA9_3 Lymph node NOS Biopsy (6):milestone,0,0 section HTA9_30 Targeted Molecular Therapy:,0,287 section HTA9_30 Immunotherapy (Including Vaccines):,30,224 section HTA9_30 Chemotherapy:,294,330 section HTA9_30 Immunotherapy (Including Vaccines):,294,337 section HTA9_30 Chemotherapy:,350,455 section HTA9_30 Chemotherapy:,350,463 section HTA9_30 Blood Blood draw:milestone,0,0 section HTA9_30 Breast NOS Biopsy (4):milestone,0,0 section HTA9_30 Breast NOS Biopsy (4):milestone,28,28 section HTA9_30 Breast NOS Biopsy:milestone,486,486 section HTA9_32 Targeted Molecular Therapy:,0,75 section HTA9_32 Immunotherapy (Including Vaccines):,26,53 section HTA9_32 Blood Blood draw:milestone,0,0 section HTA9_32 Liver Biopsy:milestone,0,0 section HTA9_32 Lymph node NOS Biopsy (4):milestone,0,0 section HTA9_34 Targeted Molecular Therapy:,0,77 section HTA9_34 Immunotherapy (Including Vaccines):,27,55 section HTA9_34 Blood Blood draw:milestone,0,0 section HTA9_34 Liver Biopsy (3):milestone,0,0 section HTA9_34 Pleura NOS Biopsy (2):milestone,0,0 section HTA9_34 Pleura NOS Biopsy (2):milestone,27,27 section HTA9_36 Targeted Molecular Therapy:,0,479 section HTA9_36 Immunotherapy (Including Vaccines):,30,479 section HTA9_36 Blood Blood draw:milestone,0,0 section HTA9_36 Connective subcutaneous and other soft tissues NOS Biopsy (2):milestone,0,0 section HTA9_36 Lymph nodes of axilla or arm Biopsy (2):milestone,0,0 section HTA9_36 Lymph nodes of axilla or arm Biopsy (2):milestone,82,82 section HTA9_38 Targeted Molecular Therapy:,0,273 section HTA9_38 Immunotherapy (Including Vaccines):,26,257 section HTA9_38 Chemotherapy:,278,341 section HTA9_38 Blood Blood draw:milestone,0,0 section HTA9_38 Connective subcutaneous and other soft tissues of trunk NOS Biopsy:milestone,0,0 section HTA9_38 Lymph node NOS Biopsy (3):milestone,0,0 section HTA9_38 Lymph node NOS Biopsy (2):milestone,37,37 section HTA9_40 Targeted Molecular Therapy:,0,161 section HTA9_40 Immunotherapy (Including Vaccines):,29,162 section HTA9_40 Lymph node NOS Biopsy (2):milestone,0,0 section HTA9_40 Lymph node NOS Biopsy (2):milestone,29,29 section HTA9_41 Targeted Molecular Therapy:,0,20 section HTA9_41 Liver Biopsy (2):milestone,0,0 section HTA9_42 Targeted Molecular Therapy:,0,595 section HTA9_42 Immunotherapy (Including Vaccines):,25,340 section HTA9_42 Lymph node NOS Biopsy (2):milestone,0,0 section HTA9_42 Lymph node NOS Biopsy (4):milestone,20,20 section HTA9_43 Targeted Molecular Therapy:,0,52 section HTA9_43 Immunotherapy (Including Vaccines):milestone,25,25 section HTA9_43 Lung NOS Biopsy (2):milestone,0,0 section HTA9_43 Lymph node NOS Fine Needle Aspirate:milestone,0,0 section HTA9_44 Targeted Molecular Therapy:,0,26 section HTA9_44 Liver Biopsy:milestone,0,0 section HTA9_44 Liver Biopsy (4):milestone,51,51 section HTA9_45 Targeted Molecular Therapy:,0,130 section HTA9_45 Immunotherapy (Including Vaccines):,33,116 section HTA9_45 Lymph node NOS Biopsy (3):milestone,0,0 section HTA9_45 Lymph nodes of axilla or arm Biopsy:milestone,0,0 section HTA9_7 Targeted Molecular Therapy:,0,52 section HTA9_7 Immunotherapy (Including Vaccines):milestone,40,40 section HTA9_7 Blood Blood draw:milestone,0,0 section HTA9_7 Breast NOS Biopsy (7):milestone,0,0 section HTA9_7 skin NOS Biopsy (7):milestone,0,0 section HTA9_8 Targeted Molecular Therapy:,0,73 section HTA9_8 Immunotherapy (Including Vaccines):,28,56 section HTA9_8 Blood Blood draw:milestone,0,0 section HTA9_8 Liver Biopsy (6):milestone,0,0 section HTA9_8 Liver Biopsy (5):milestone,28,28 section HTA9_9 Other:,0,1187 section HTA9_9 Targeted Molecular Therapy:,1015,1081 section HTA9_9 Immunotherapy (Including Vaccines):,1043,1074 section HTA9_9 Blood Blood draw:milestone,0,0 section HTA9_9 Connective subcutaneous and other soft tissues NOS Biopsy (7):milestone,0,0 section HTA9_9 Lymph node NOS Biopsy (6):milestone,0,0

This tab is for HTAN DCC debugging purposes only. It reviews all paths in the atlas, and summarizes:

the number of files annotated via an existing metadata file.
the number of files upload to the cloud, but not yet annotated with any metadata.

Root Path	Num Annotated Files	Num Unannotated Files
bulk_dnaseq_level_1	324	6
bulk_dnaseq_level_2	68	0
bulk_dnaseq_level_3	146	10
bulk_rnaseq_level_1	162	0
bulk_rnaseq_level_2	65	0
bulk_rnaseq_level_3	70	0
clinical_imaging_level_1	779	0
em_level_1	99144	0
em_level_2	63038	3888
em_level_3	32	0
em_level_4	41	3
Example_Assay_Dataset	0	4
geomx_auxiliary_pkc	0	10
geomx_imaging_level_2	77	0
geomx_level_3	46	23
imaging_channel_data	0	96
imaging_level_1	0	464
imaging_level_2	412	0
imaging_level_3	448	48
imaging_level_4	410	0
minerva_stories	0	518
nanostring_level_1	0	2
nanostring_level_2	0	2
nanostring_level_3	0	3
rel7_imaging_level_2	67	0
rel7_imaging_level_3	201	0
rel7_imaging_level_4	201	0
rel7_sc_atacseq_level_1	28	0
rel7_sc_atacseq_level_2	14	0
rel7_sc_atacseq_level_3	14	0
rppa_antibody_tables	0	13
rppa_level_2	53	0
rppa_level_3	53	0
rppa_level_4	74	0
sc_atacseq_level_1	38	0
sc_atacseq_level_2	19	0
sc_atacseq_level_3	24	0
sc_dnaseq_level_1	1615	0
sc_dnaseq_level_2	1271	0
sc_dnaseq_level_3	0	11
sc_rnaseq_level_1	100	0
sc_rnaseq_level_2	13	0
sc_rnaseq_level_3	13	0
targeted_dnaseq_level_1	187	0
targeted_dnaseq_level_2	73	0
targeted_dnaseq_level_3	64	0

This tab is for HTAN DCC debugging purposes only. Atlases should please ignore.

Download Cytoscape SIF Network (DCC Debugging)

HTA9: HTAN OHSU

Total File Size

14.2 TB

Total Number of Files

174,485

Validation Errors

26

Percent Metadata Complete

87.2%

Clinical Data Matrix: Tiers 1 and 2

Clinical Data Matrix: Tier 3

Assay Matrix: Single Cell Data

Assay Matrix: Bulk Data

Assay Matrix: Core Imaging

Assay Matrix: Other

Longitudinal Data

Longitudinal Details Plot

HTA9: HTAN OHSU

Total File Size

14.2 TB

Total Number of Files

174,485

Validation Errors

26

Percent Metadata Complete

87.2%

All Atlas Categories are supported by the Dashboard. Failed: 4 errors

At least one Demographics file found. Passed

Non-Demographic clinical data use same IDs as demographics file. Passed

At least one Biospecimen file found. Passed

HTAN IDs follow the SOP. Failed: 4 errors

Links connect. Failed: 4 errors

Synapse Entity IDs are Specified for Assays. Passed

File names follow Cancer Data Service (CDS) conventions. Failed: 14 warnings

Clinical Data Matrix: Tiers 1 and 2

View Details

Clinical Data Matrix: Tier 3

View Details

Assay Matrix: Single Cell Data

View Details

Assay Matrix: Bulk Data

View Details

Assay Matrix: Core Imaging

View Details

Assay Matrix: Other

View Details

Longitudinal Data

Longitudinal Data

Longitudinal Details Plot

Longitudinal Details Plot